Refactor update_mongo.py to enhance JSON downloading and file handling; update MongoDB host in test_tableddl_from_yaml.py
This commit is contained in:
+3
-84300
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Load Diff
+205
@@ -0,0 +1,205 @@
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#!/usr/bin/env python3
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"""Convert a MongoDB collection into a PostgreSQL table.
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Contains `convert_mongo_to_pg(mongo_uri, mongo_db, collection_name, pg_dsn, pg_table=None, ...)`
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and a small CLI.
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Notes:
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- Uses `pymongo` to read documents and `psycopg2` to write to Postgres.
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- Infers basic column types from a sample of documents; nested objects/arrays
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are stored as `JSONB`.
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"""
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from __future__ import annotations
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import argparse
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import json
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import logging
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from typing import Any, Dict, Iterable, List, Optional
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import pymongo
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import psycopg2
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import psycopg2.extras as pgextras
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import psycopg2.sql as sql
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LOG = logging.getLogger("mongo2pgsql")
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def _detect_type(value: Any) -> str:
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if value is None:
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return "null"
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if isinstance(value, bool):
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return "boolean"
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if isinstance(value, int) and not isinstance(value, bool):
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return "integer"
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if isinstance(value, float):
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return "real"
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if isinstance(value, (dict, list)):
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return "jsonb"
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return "text"
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def _merge_types(types: List[str]) -> str:
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# priority: jsonb > text > real > integer > boolean > null
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s = set(types)
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if "jsonb" in s:
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return "jsonb"
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if "text" in s:
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return "text"
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if "real" in s:
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return "real"
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if "integer" in s:
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return "integer"
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if "boolean" in s:
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return "boolean"
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return "text"
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def _pg_type_for(kind: str) -> str:
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return {
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"integer": "BIGINT",
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"real": "DOUBLE PRECISION",
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"boolean": "BOOLEAN",
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"jsonb": "JSONB",
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"text": "TEXT",
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}.get(kind, "TEXT")
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def convert_mongo_to_pg(
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mongo_uri: str,
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mongo_db: str,
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collection_name: str,
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pg_dsn: str,
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pg_table: Optional[str] = None,
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sample_size: int = 500,
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batch_size: int = 1000,
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create_table: bool = True,
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pk_field: str = "_id",
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) -> None:
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"""Copy a MongoDB collection to PostgreSQL.
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- `pg_table` defaults to `collection_name` if omitted.
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- Nested documents/arrays are stored as JSONB.
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- `_id` is stored as TEXT by default.
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"""
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if pg_table is None:
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pg_table = collection_name
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client = pymongo.MongoClient(mongo_uri)
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coll = client[mongo_db][collection_name]
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sample = list(coll.find({}, projection=None, limit=sample_size))
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if not sample:
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raise ValueError("collection is empty or not found")
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# gather all field names and observed types
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field_types: Dict[str, List[str]] = {}
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for doc in sample:
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for k, v in doc.items():
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t = _detect_type(v)
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field_types.setdefault(k, []).append(t)
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# finalize types
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final_types: Dict[str, str] = {}
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for k, types in field_types.items():
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merged = _merge_types(types)
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final_types[k] = _pg_type_for(merged)
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# ensure primary key present
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if pk_field not in final_types:
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final_types[pk_field] = "TEXT"
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cols = list(final_types.items())
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# create table
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if create_table:
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# Build CREATE TABLE statement using psycopg2.sql for safe identifiers
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col_defs = []
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for name, ptype in cols:
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col_defs.append(sql.SQL("{} {}").format(sql.Identifier(name), sql.SQL(ptype)))
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create_body = sql.SQL(", ").join(col_defs)
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if pk_field in final_types:
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pk_clause = sql.SQL(", PRIMARY KEY ({})").format(sql.SQL(",").join(map(sql.Identifier, [pk_field])))
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create_body = create_body + pk_clause
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create_stmt = sql.SQL("CREATE TABLE IF NOT EXISTS {} ({})").format(sql.Identifier(pg_table), create_body)
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with psycopg2.connect(pg_dsn) as pgconn:
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with pgconn.cursor() as cur:
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LOG.info("Creating table %s", pg_table)
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cur.execute(create_stmt)
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pgconn.commit()
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# stream documents and insert
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insert_cols = [n for n, _ in cols]
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with psycopg2.connect(pg_dsn) as pgconn:
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with pgconn.cursor() as cur:
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# build INSERT statement for execute_values: it expects a single %s
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base_insert = sql.SQL("INSERT INTO {} ({}) VALUES %s").format(
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sql.Identifier(pg_table),
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sql.SQL(', ').join(map(sql.Identifier, insert_cols)),
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).as_string(pgconn)
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batch = []
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# Use an explicit session when using no_cursor_timeout to avoid pymongo warning
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with client.start_session() as session:
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cursor = coll.find({}, no_cursor_timeout=True, session=session).batch_size(batch_size)
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try:
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for doc in cursor:
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row = []
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for col_name in insert_cols:
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v = doc.get(col_name)
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if v is None:
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row.append(None)
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continue
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# convert ObjectId and other non-JSON types
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if isinstance(v, (dict, list)):
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row.append(pgextras.Json(v))
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else:
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row.append(str(v) if col_name == pk_field else v)
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batch.append(tuple(row))
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if len(batch) >= batch_size:
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pgextras.execute_values(cur, base_insert, batch, template=None, page_size=batch_size)
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pgconn.commit()
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batch = []
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finally:
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try:
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cursor.close()
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except Exception:
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pass
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if batch:
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pgextras.execute_values(cur, base_insert, batch, template=None, page_size=len(batch))
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pgconn.commit()
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LOG.info("Finished copying collection %s.%s to %s", mongo_db, collection_name, pg_table)
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def _cli() -> None:
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parser = argparse.ArgumentParser(description="Copy a MongoDB collection to PostgreSQL")
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parser.add_argument("mongo_uri", help="MongoDB connection URI, e.g. mongodb://user:pw@host:27017")
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parser.add_argument("mongo_db", help="MongoDB database name")
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parser.add_argument("collection", help="Collection name to copy")
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parser.add_argument("pg_dsn", help="Postgres DSN, e.g. \"host=.. dbname=.. user=.. password=..\"")
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parser.add_argument("--pg-table", help="Target Postgres table name (defaults to collection name)")
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parser.add_argument("--sample", type=int, default=500, help="Sample size to infer schema")
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parser.add_argument("--batch", type=int, default=1000, help="Insert batch size")
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parser.add_argument("--no-create", dest="create", action="store_false", help="Don't attempt to create table in PG")
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parser.add_argument("--verbose", "-v", action="store_true")
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args = parser.parse_args()
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logging.basicConfig(level=logging.DEBUG if args.verbose else logging.INFO)
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convert_mongo_to_pg(
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args.mongo_uri,
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args.mongo_db,
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args.collection,
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args.pg_dsn,
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pg_table=args.pg_table,
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sample_size=args.sample,
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batch_size=args.batch,
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create_table=args.create,
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)
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if __name__ == "__main__":
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_cli()
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-71381
File diff suppressed because it is too large
Load Diff
-71381
File diff suppressed because it is too large
Load Diff
Regular → Executable
+186
-32
@@ -5,15 +5,18 @@ import time
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import sys
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import url.urls
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import url.process
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import api.tvmaze.cast as mazecast
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import api.tvmaze.crew as mazecrew
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import api.tvmaze.episodes as mazeepisodes
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import api.tvmaze.series as mazeseries
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# import api.tvmaze.cast as mazecast
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# import api.tvmaze.crew as mazecrew
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# import api.tvmaze.episodes as mazeepisodes
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# import api.tvmaze.series as mazeseries
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from pathlib import Path
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import db.sql
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import jprocessor.process
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import logs.Logger
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from db.functions import settype, dbmongo
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from datetime import datetime
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import json_downloader
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import json
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response = None
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@@ -57,6 +60,23 @@ def get_tvdb(tvdburls):
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def get_tvmaze(tvmazeurls):
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return tvmazeurls.get_data()
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def find_file_in_multiple_dirs(filename, directories):
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"""
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Checks if a file exists in any of the provided directories.
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Args:
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filename (str): The name of the file to search for.
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directories (list): A list of directory paths to check.
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Returns:
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Path or None: The full path to the file if found, otherwise None.
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"""
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directories_found = []
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for directory in directories:
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if os.path.isfile(f'{directory}{filename}'):
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directories_found.append(directory)
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return directories_found
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def main() -> int:
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ROOTDIR = os.getcwd()
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@@ -67,6 +87,9 @@ def main() -> int:
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directories["EPISODEDIR"] = os.path.join(ROOTDIR, "cache", "episodes") + os.sep
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directories["CASTDIR"] = os.path.join(ROOTDIR, "cache", "cast") + os.sep
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directories["CREWDIR"] = os.path.join(ROOTDIR, "cache", "crew") + os.sep
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directories["CREDITSDIR"] = os.path.join(ROOTDIR, "cache", "credits") + os.sep
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directories["ALIASDIR"] = os.path.join(ROOTDIR, "cache", "aliases") + os.sep
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tempdir = os.path.join(ROOTDIR, 'temp') + os.sep
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# Create directories if missing so later code doesn't fail
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try:
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@@ -93,10 +116,6 @@ def main() -> int:
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TVMAZE_URLS = get_tvmaze(TVMAZEURLS)
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TVDBURLS = url.urls.TVDBurls()
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TVDB_URLS = get_tvdb(TVDBURLS)
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#mseries = mazeseries.tvshow()
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#mcast = mazecast.cast()
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#mepisode = mazeepisodes.episodes()
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#mcrew = mazecrew.crew()
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countrydictionary = {}
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updateRange = None
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@@ -171,37 +190,172 @@ def main() -> int:
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lprint.logprint("info", "Update Type: " + str(options["updatetype"]))
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updateRange = len(updateList)
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lprint.logprint("info", "Number of updates: " + str(updateRange))
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# Save a downloaded copy of the updates JSON for debugging/inspection
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try:
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cacher.update_cache(
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jget, updateList, ROOTDIR, TVMAZE_URLS, options, lprint
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os.makedirs(tempdir, exist_ok=True)
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out_file = 'tvmaze_updates.json'
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# TVMAZE_URLS is a dict of urls; use the updatesurl if available
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updates_url = TVMAZE_URLS.get('updatesurl') if isinstance(TVMAZE_URLS, dict) else None
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if updates_url:
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json_downloader.download_json_to_file(updates_url, tempdir, out_file)
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# load and convert saved JSON into a dict (id -> timestamp)
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try:
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downloaded_updates_dict = {}
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downloaded_updates_list = []
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if os.path.exists(f"{tempdir}{out_file}"):
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with open(f"{tempdir}{out_file}", 'r') as jf:
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loaded = json.load(jf)
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if isinstance(loaded, dict):
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for k, v in loaded.items():
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try:
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kid = int(k)
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except Exception:
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kid = k
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try:
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vt = int(v)
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except Exception:
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vt = v
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downloaded_updates_dict[kid] = vt
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downloaded_updates_list = list(downloaded_updates_dict.items())
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elif isinstance(loaded, list):
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for item in loaded:
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if isinstance(item, list) and len(item) >= 2:
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k = item[0]; v = item[1]
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elif isinstance(item, dict):
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if 'id' in item and 'timestamp' in item:
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k = item['id']; v = item['timestamp']
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elif 'seriesid' in item and 'timestamp' in item:
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k = item['seriesid']; v = item['timestamp']
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else:
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downloaded_updates_list.append(item)
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continue
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else:
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k = item; v = None
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try:
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kid = int(k)
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except Exception:
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kid = k
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try:
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vt = int(v) if v is not None and str(v).isdigit() else v
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except Exception:
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vt = v
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downloaded_updates_dict[kid] = vt
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downloaded_updates_list.append((kid, vt))
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else:
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downloaded_updates_list = [loaded]
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lprint.logprint("info", f"Loaded {len(downloaded_updates_list)} entries from tvmaze_updates.json")
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else:
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downloaded_updates_dict = {}
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downloaded_updates_list = []
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except Exception:
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downloaded_updates_dict = {}
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downloaded_updates_list = []
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except Exception:
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# non-fatal; continue
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pass
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del downloaded_updates_list
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previouslisting = dbExec.rawsql_select(
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dbengine["engine"],
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"select seriesid, timestamp from updates.tvupdates order by seriesid",
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lprint
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)
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# convert previouslisting (list of tuples) into a dict: row_id -> country_name
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try:
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_previouslisting_list = previouslisting
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previous_listing_dict = {row[0]: row[1] for row in _previouslisting_list}
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except Exception:
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# leave previouslisting as-is on any failure
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pass
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# Ensure dictionaries exist
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try:
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downloaded_updates_dict
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except NameError:
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downloaded_updates_dict = {}
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try:
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previous_listing_dict
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except NameError:
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previous_listing_dict = {}
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files_needed = []
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directory_list = []
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for value in directories.values():
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directory_list.append(value)
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for seriesid, ts in downloaded_updates_dict.items():
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if seriesid in previous_listing_dict:
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prev_ts = previous_listing_dict[seriesid]
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try:
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if int(ts) == int(prev_ts):
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found_path = find_file_in_multiple_dirs(f"{seriesid}.json", directory_list)
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#print(f"Found path for series ID {seriesid}: {found_path}")
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if len(found_path) == 6:
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continue
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else:
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for directory in directory_list:
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if directory not in found_path:
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files_needed.append([f"{directory}", f"{seriesid}.json"])
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else:
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for directory in directory_list:
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files_needed.append([f"{directory}", f"{seriesid}.json"])
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except Exception:
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for directory in directory_list:
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files_needed.append([f"{directory}", f"{seriesid}.json"])
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else:
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for directory in directory_list:
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files_needed.append([f"{directory}", f"{seriesid}.json"])
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lprint.logprint("debug", f"Series {seriesid} present in downloaded updates but missing in previous listing")
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lprint.logprint("info", f"Downloadinng JSON for {len(files_needed)} series IDs.")
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print(f"Downloadinng JSON for {len(files_needed)} series IDs.")
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try:
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for directory, filename in files_needed:
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if 'credits' in directory:
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url_template = TVMAZE_URLS["creditsurl"]
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elif 'crew' in directory:
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url_template = TVMAZE_URLS["crewurl"]
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elif 'cast' in directory:
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url_template = TVMAZE_URLS["casturl"]
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elif 'episodes' in directory:
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url_template = TVMAZE_URLS["episodesurl"]
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elif 'aliases' in directory:
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url_template = TVMAZE_URLS["aliasurl"]
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else:
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url_template = TVMAZE_URLS["showurl"]
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seriesid = filename.replace('.json', '')
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json_downloader.download_json_to_file(url_template.replace("<seriesid>", str(seriesid)), directory, f'{seriesid}.json')
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except Exception as exc:
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lprint.logprint("error", f"update_cache failed: {exc}")
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return 1
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countrylisting = dbExec.rawsql_select(
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dbengine["engine"],
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"select row_id, country_name from dbo.countrydata",
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lprint
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)
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for country in countrylisting:
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country_name = country[1]
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country_id = country[0]
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countrydictionary[country_name] = country_id
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mongo_updater = dbmongo(options)
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mongo_updater.update_mongo(
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updateList,
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ROOTDIR,
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directories,
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jget,
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countrydictionary,
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dbExec,
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dbengine,
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dboBase,
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lprint,
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)
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return 0
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# countrylisting = dbExec.rawsql_select(
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# dbengine["engine"],
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# "select row_id, country_name from dbo.countrydata",
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# lprint
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# )
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# for country in countrylisting:
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# country_name = country[1]
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# country_id = country[0]
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# countrydictionary[country_name] = country_id
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# mongo_updater = dbmongo(options)
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# mongo_updater.update_mongo(
|
||||
# updateList,
|
||||
# ROOTDIR,
|
||||
# directories,
|
||||
# jget,
|
||||
# countrydictionary,
|
||||
# dbExec,
|
||||
# dbengine,
|
||||
# dboBase,
|
||||
# lprint,
|
||||
# )
|
||||
# return 0
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
sys.exit(main())
|
||||
|
||||
|
||||
@@ -55,7 +55,7 @@ except Exception as e:
|
||||
exit()
|
||||
|
||||
|
||||
host = '192.168.128.8'
|
||||
host = '192.168.128.24'
|
||||
port = 27017
|
||||
print(f"Connecting to mongodb at {host}:{port}")
|
||||
|
||||
@@ -83,7 +83,7 @@ else:
|
||||
f"Connection to mongodb at {host}:"
|
||||
f"{port} successful."
|
||||
)
|
||||
os.chdir('C:\\Projects\\new_dbsync\\db\\ddl')
|
||||
#os.chdir('C:\\Projects\\new_dbsync\\db\\ddl')
|
||||
# Create the database and tables in PostgreSQL
|
||||
# Check if the database exists, if not create it
|
||||
# Check if the tables exist, if not create them
|
||||
|
||||
Reference in New Issue
Block a user